Identification of Cytochrome P450 (CYP) genes in Zhikong scallop (Chlamys farreri)     

GUO Huihui  BAO Zhenmin  DU Huixia  ZHANG Lingling  WANG Shi  SUN Luyang  MOU Xiaoyu  HU Xiaoli 《中国海洋大学学报(英文版)》2013,12(1):97-102

Cytochrome P450 (CYP) superfamily is one of the membership largest and function most diverse protein superfamily recogniozed among living beings. Members of this superfamily were further assigned to different families and subfamilies based on their amino acid similarities. According to their phylogenetic relationships, the CYP genes which likely diverged from common ancestor gene and may share common functions were grouped into one clan. Widely distributing scallops are a group of the most conspicuous bivalve; however the studies on their CYP is acarce. In this study, we searched the genome and expressed sequence tags of Zhikong scallop (Chlamys farreri) for CYP genes. In total, 88 non-redundant CYP were identified, which were homed in 13 CYPs gene families. Phylogenetic analysis divided these genes into 4 CYP clans. As in deuterostomes, Clan 2 was the largest, which contained 33 genes belonging to CYP1, CYP2, CYP17 and CYP356 families. Clan 3 contgained 19 genes belonging to CYP3, CYP5 and CYP30 families. Clan 4 contained 23 genes, all belonging to CYP4 family. The mitochondrial CYP clan contained 9 genes belonging to CYP10 and CYP24 families. In comparison, protostomes (C. farreri, D. pluex, D. melanogaster) contained more CYP genes than deuterostomes (S. purpuratus and vertebrates) in Clan 2 but less genes in Clan 3 and Clan 4. Our findings will aid to deciphering CYP function and evolution in scallops and bivalves.  相似文献   

Development of 101 novel EST-derived single nucleotide polymorphism markers for Zhikong scallop (Chlamys farreri)   总被引：1，自引：0，他引：1  

LI Jiqin  BAO Zhenmin  LI Ling  WANG Xiaojian  WANG Shi  HU Xiaoli 《中国海洋大学学报(英文版)》2013,12(3):403-412

Zhikong scallop(Chlamys farreri) is an important maricultured species in China.Many researches on this species,such as population genetics and QTL fine-mapping,need a large number of molecular markers.In this study,based on the expressed sequence tags(EST),a total of 300 putative single nucleotide polymorphisms(SNPs) were selected and validated using high resolution melting(HRM) technology with unlabeled probe.Of them,101(33.7%) were found to be polymorphic in 48 individuals from 4 populations.Further evaluation with 48 individuals from Qingdao population showed that all the polymorphic loci had two alleles with the minor allele frequency ranged from 0.046 to 0.500.The observed and expected heterozygosities ranged from 0.000 to 0.925 and from 0.089 to 0.505,respectively.Fifteen loci deviated significantly from Hardy-Weinberg equilibrium and significant linkage disequilibrate was detected in one pair of markers.BLASTx gave significant hits for 72 of the 101 polymorphic SNP-containing ESTs.Thirty four polymorphic SNP loci were predicted to be non-synonymous substitutions as they caused either the change of codons(33 SNPs) or pretermination of translation(1 SNP).The markers developed can be used for the population studies and genetic improvement on Zhikong scallop.  相似文献   

Levels and distribution of polybrominated diphenyl ethers and organochlorine compounds in sea turtles from Japan     

《Marine pollution bulletin》2012,64(5-12):172-178

Three species of sea turtles (green, hawksbill and loggerhead turtles) stranded along the coasts or caught (by-catch) around Ishigaki Island and Kochi, Japan were collected between 1998 and 2006 and analyzed for six organohalogen compounds viz., PBDEs, PCBs, DDTs, CHLs, HCHs and HCB. The present study is the first and foremost to report the occurrence of organohalogen compounds in the sea turtles from Japan. Among the compounds analyzed, concentrations of PCBs, DDTs and CHLs were the highest in all the turtle samples. PBDEs were ubiquitously present in all the turtle species. Comparing with the other two species, concentrations of organohalogens in green turtle were relatively low and decreasing trend in the concentrations were noted with increasing carapace length. Concentrations of OCs in sea turtles from the coasts of Ishigaki Island and Kochi were relatively low as compared to those from other locations in the world.  相似文献   

铜离子对单环刺螠的毒性及对体壁抗氧化酶活性的影响     

李金龙  秦贞奎  史晓丽  张志峰 《海洋湖沼通报》2012,(2):77-82

本文研究了重金属Cu2+对单环刺螠毒性效应。通过急性毒性试验,确定了Cu2+对单环刺螠24h、48h、72h及96h的半致死浓度,并计算得到其安全浓度为0.0675mg/L,高于渔业水质。通过酶活测定,发现Cu2+对单环刺螠抗氧化酶活性有影响。实验结果表明当暴露于0.25mg/L及0.50mg/L浓度的Cu2+中,24h时,单环刺螠体壁SOD、GPx活性显著提高(P<0.05);之后,随着暴露时间的增长,SOD、GPx、CAT三种酶活性均有所下降,除SOD外,其余两种酶活性均低于对照组,其中0.50mg/L组96h时CAT的活性显著低于对照组(P<0.05),说明Cu2+抑制了GPx及CAT的活性,并导致了虫体的死亡。  相似文献   

控制虾夷扇贝闭壳肌积累类胡萝卜素相关基因的筛查     

任晓亮  侯睿  王珊  战渊超  黄晓婷  包振民 《中国海洋大学学报(自然科学版)》2012,(9):41-47

利用抑制性差减杂交技术(Suppression subtractive hybridization,SSH)对虾夷扇贝闭壳肌积累类胡萝卜素相关基因进行筛查和分析。以虾夷扇贝橘红色闭壳肌和白色闭壳肌cDNA构建正反向差减文库,结合454测序技术在正向差减文库中测序得到2 640条序列,拼接得到50个contigs(重叠群);反向差减文库中测序得到2 496条序列,拼接得到187个contigs。经过同源性比对分析,共获得150多个差异表达基因,从中选择3种清道夫受体SRB1、SRF2和SRCR作为候选基因进行研究,对其在虾夷扇贝各组织中的表达量水平进行检测,初步阐述了其在虾夷扇贝中的组织表达规律。根据结果推测在虾夷扇贝橘红色闭壳肌中,清道夫受体有可能是调节类胡萝卜素累积和转运的关键基因。本研究为虾夷扇贝闭壳肌类胡萝卜素累积相关通路的探索提供了初步研究的基础数据。  相似文献   

单环刺螠生殖腺的发生及雌体的生殖周期   总被引：2，自引：0，他引：2  

李昀  王航宁  邵明瑜  张志峰 《中国海洋大学学报(自然科学版)》2012,42(6):81-84

采用组织学方法观察单环刺螠(Urechis unicinctus)生殖腺的发生、卵巢的结构及其年周期变化.结果显示:3.5cm幼螠中,原始生殖细胞迁至后肠管壁外的结缔组织膜处,并数个集群与该处的体细胞共同构成性腺原基;至4 cm幼螠,性腺初具雏形;随着个体的生长和成熟,构成卵巢的细胞不断增殖,于虫体尾部后肠腹侧形成长条形膜状的卵巢,外周为卵原细胞,中央为结缔组织,其两端分别与后肠管壁外侧和体壁内侧相连.根据卵巢的组织学和体腔液中雌性生殖细胞的细胞学特征,单环刺螠的卵巢发育可划分为增殖期、生长期、成熟期、排放期和休止期5个时期.单环刺螠生殖腺为低等的定型类型,其卵巢成熟期较生殖期早半个月.  相似文献   

电刺激诱导栉孔扇贝雌核发育的相关参数的筛选     

商文聪  赵泊淞  陈亮  孙妍  张玲玲  胡晓丽  包振民 《中国海洋大学学报(自然科学版)》2012,(10):65-70

电刺激可诱导卵子雌核发育,但在海洋生物中尚无报道。为获得电刺激诱导栉孔扇贝雌核发育的最佳条件,采用正交设计的方法,分别研究了电场强度、电容、脉冲次数、卵子密度及缓冲液种类对诱导效果的影响。结果表明:(1)不同缓冲液的诱导效果差异不显著(P>0.05),但甘露醇缓冲液的诱导效果优于Zimmerman氏缓冲液和山梨醇缓冲液;最佳卵子密度为11.25×104个/mL,场强的最适范围为1.00～1.75kV/cm。最优电刺激诱导条件组合是:0.30mol/L甘露醇缓冲液,卵子密度11.25×104个/mL,脉冲强度1.20kV/cm,电容3μF,2次电脉冲。(2)应用优化后的电刺激参数诱导雌核发育,获得了最佳的诱导效果,得到的卵裂率为28.16%,胚胎存活率为98.37%。本研究首次成功应用电刺激法诱导了栉孔扇贝的雌核发育,并得到了单倍体胚胎,初步建立了栉孔扇贝中该诱导法的参数体系。  相似文献   

Molecular identification and culture observation on <Emphasis Type="Italic">Acrochaete leptochaete</Emphasis> (Chaetophoraceae,Chlorophyta) from China     

邓蕴彦  汤晓荣  黄冰心  滕林宏  丁兰平 《中国海洋湖沼学报》2012,30(3):476-484

Acrochaete leptochaete (Huber) Nielsen (Chaetophoraceae, Chlorophyta) was isolated from the macroalgae Chaetomorpha collected from intertidal pools in Rongcheng, Shandong, China. 18S rDNA combined with ITS regions were used to ascertain the morphological identification of the isolated material. Based on the unialgal culture, asexual reproduction and growth characteristics of A. leptochaete were investigated over wide ranges of temperature and irradiance. Results revealed that asexual reproduction of A. leptochaete could be realized by biflagellate zoospores. The zoospores germinated directly to give self- replicating generations. Zoospore germination was bipolar. A temperature range from 13-21°C and a lower irradiance of 36 μmol/(m2·s) were most favorable for the growth of A. leptochaete. Thallus organization, an important taxonomic criterion for the genus Acrochaete, was affected markedly by temperature and irradiance. Our results extend the knowledge about the species’ general biology and its morphological plasticity. For classification and identification of a simple microphytic algae like A. leptochaete, which are traditionally placed in the class Chaetophoraceae, we propose that molecular tools associated with culture observations are applied.  相似文献   

The first Mesozoic colydiid beetles (Coleoptera: Zopheridae: Colydiinae) from the Upper Cretaceous amber of Myanmar     

《Cretaceous Research》2017

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Two extraterrestrial dust horizons found in the Dome Fuji ice core,East Antarctica     

Keiji Misawa  Mika Kohno  Takayuki Tomiyama  Takaaki Noguchi  Tomoki Nakamura  Keisuke Nagao  Takashi Mikouchi  Kunihiko Nishiizumi 《Earth and Planetary Science Letters》2010,289(1-2):287-297

Two silicate-rich dust layers were found in the Dome Fuji ice core in East Antarctica, at Marine Isotope Stages 12 and 13. Morphologies, textures, and chemical compositions of constituent particles reveal that they are high-temperature melting products and are of extraterrestrial origin. Because similar layers were found ～ 2000 km east of Dome Fuji, at EPICA (European Project for Ice Coring in Antarctica)-Dome C, particles must have rained down over a wide area 434 and 481 ka. The strewn fields occurred over an area of at least 3 × 10⁶ km². Chemical compositions of constituent phases and oxygen isotopic composition of olivines suggest that the upper dust layer was produced by a high-temperature interaction between silicate-rich melt and water vapor due to an impact explosion or an aerial burst of a chondritic meteoroid on the inland East Antarctic ice sheet. An estimated total mass of the impactor, on the basis of particle flux and distribution area, is at least 3 × 10⁹ kg. A possible parent material of the lower dust layer is a fragment of friable primitive asteroid or comet. A hypervelocity impact of asteroidal/cometary material on the upper atmosphere and an explosion might have produced aggregates of sub-μm to μm-sized spherules. Total mass of the parent material of the lower layer must exceed 1 × 10⁹ kg. The two extraterrestrial horizons, each a few millimeters in thickness, represent regional or global meteoritic events not identified previously in the Southern Hemisphere.  相似文献